機器(委託対応)の詳細情報

Detailed Information of Equipment(Job Request)

Equipment and Job Request Information
Affiliation Laboratory of Sports Medicine, Faculty of Medicine
Category Biocompound Analyzers
Equipment (Job Request) Bioinformatics analysis support
Supplier (Equipment type) Bioinformatics analysis support

Specification・Features

Our department have been supported bioinformatics analysis using data obtained from next-generation sequencers (NGS). We will carry out analysis according to the requester and create a figures and tables. The outline of the analysis that can be supported is as follows, However, please note that we may not be able to handle analysis that exceeds the technology possessed by our department.If you have used RNA-seq analysis in our department and have passed more than one month since the completion of data delivery, please use this survice to request reanalysis.

Available analysis:
Data analysis with RNA-seq, ChIP-seq, genomic DNA-seq (always updated).

Available data:
FASTQ, expression quantitative data (TPM, RPKM, read count data, etc.).

Supported species:
Mammals such as humans, mice and rats. Also Bacteria.

Software and analysis tools used:
CLC Gemonics Workbench, R, Ptyton, GeneMania, Metascpe, DAVID, GSEA, etc. (always updated).

Figures and tables that can be created:
expression quantitative data, hierarchical clustering, heat map, pathway, GO (Gene Ontology), Scatter plot, Volcano plot, Venn diagram, gene mutation identification.
Installation site Room No. 236, Institute of Medical Sciences
Remark
Research Accomplishment
Inquiry 利用相談はこちらより必要事項をご記入の上、お問い合わせください。
機器担当者 担当者:菅澤
所属:医学医療系
University-wide
Job Request Rate
4,010 Yen / specimen
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